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Data

• Data Inra Dataverse

Data resulting from this work has been deposited in Data INRA portal, DOI : 10.15454/UGMTBK

• Raw data
Paired end sequencing of a library of E. alphitoides
184,631,409 sequences x 2

SRA Bioproject : PRJNA593204

SRA Accession : SRR10956459


• Assembled Data

Assembly	Library	Assembler	Assembled by
Assembly 1	1	CLCBio 7.0.3





	Contigs >= 100bp	Contigs >= 500bp
Number of contigs	555,289	103,796
Total length (bp)	308,366,353	220,475,546
Average length (bp)	532	2,124
N50 (bp)	1,735	3,449




• Contigs / genes
1.   List of the 951 contigs longer than 10kb and the 3045 annotated genes



• Files
1.   951 contigs E. alphitoides (>= 10Kb, aligned on Blumeria genome)
2.   CDS of the 3,045 genes contained in the 951 E. alphitoides contigs (>= 10Kb, aligned on Blumeria genome)
3.   Coordinates of the 3,045 genes contained in the 951 E. alphitoides contigs (>= 10Kb, aligned on Blumeria genome)
4.   Sequences of the 3,045 genes contained in the 951 E. alphitoides contigs (>= 10Kb, aligned on Blumeria genome)
5.   Structure of the 3,045 genes contained in the 951 E. alphitoides contigs (>= 10Kb, aligned on Blumeria genome)
6.   49.294 genes predicted on the E. alphitoides assembly.
   
   De novo detection with Augustus software (Botrytis cinerea model)
7.   Correspondence between the 3,045 E. alphitoides genes and their orthologs in Blumeria.
   
   Only 3.039 E. alphitoides genes have an ortholog.
   
   Col1: E. alphytoides geneID (g1 to g3045)
   Col2: E. alphytoides geneID (contigID:start-end)
   Col3: Blumeria geneID and function (geneID_function)
8.   de novo assembly of E. alphitoides.
   
   103.796 contigs obtained by CLC BIO 7.0.3, Cdhit EAST 95% and elimination of contigs <500bp.